PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr028236.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 535aa    MW: 60412.8 Da    PI: 4.3773
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr028236.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS136.23.4e-421655312374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  ++lL ++ ea++ g+ el + ++  l e ++p g++++Rla+y+ ++     ++      + l+  ++   + ++  aa++lf++++P+ +f+h +aN
  Pbr028236.1 165 RHLLKAFGEAMEMGQRELEEVIMRCLVEKVNPLGQSLERLAFYLCQGVVDNQQG------DYLK--QE---SCKNFEAAFNLFYQIFPFGRFAHYAAN 251
                  7999999****************************************9988887......2222..22...356777899****************** PP

         GRAS 100 qaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvl.vakrledl 189
                   aIleav ++ e+vH++ fdi++G+Q   L++a a+R++    l +T+++  +++       + + eet+++L++ A+++gv+++ + + +++ ++++
  Pbr028236.1 252 TAILEAVPEDvETVHVVEFDIGEGVQLSQLIEAVAKRNKT---LEVTAIKWDAEEsdvvapPQWRFEETKRQLQHHARSFGVNLKVEEIeIEDLVSEI 346
                  *******9999**************************765...9*****986666779999999************************9333355556 PP

         GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPk....vvvvveqe..adh.nsesFlerflealeyysalfdsleaklpres. 279
                  +  + r  ++E la n+++ l ++   +   +    e+L+l k+l ++    ++++ + +  +++ n++sF   f   + +y al++s+e+++p +  
  Pbr028236.1 347 KKANKRGGRREFLAFNSMVGLPHMR--RRRRRGLLMEFLRLAKDLLANsargIITFGDGDacVKRgNDSSFNSSFDANVVHYKALLESIESSFPIHLg 442
                  665656666**************98..4444556799********87655669******9665668****************************9998 PP

         GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  e+ri++E +++++ +++    e+ +   +  +l+ W      +G++  ++s ++  +ak ++   +s g r  e+ + ++l W++ pLv v  W+
  Pbr028236.1 443 EARIVMELMFVAPYVSSHAWFEKWNEAREGGNLQPW------FGLEGRRVSREMLIEAKEIVGADSSYGVRGGENGNDMTLEWNSTPLVRVETWT 531
                  9************************88888899999......8***********************9************************9995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098521.035138511IPR005202Transcription factor GRAS
PfamPF035141.2E-39165531IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MMQSEMNFQT LWPYLNVTNS ALDTNEYTEQ MGSSEFSSIF MASDEFSETS FPFSTTFSGE  60
FEQLADCDNL LQVTSMAVEE FPMELGGFET NYLIGEIENM YASCLEGSEG SNTLPSQQFS  120
GEGNDEWSPN SFAISEASSM DVTSVQQSIT LPRDEMEIDN KVSIRHLLKA FGEAMEMGQR  180
ELEEVIMRCL VEKVNPLGQS LERLAFYLCQ GVVDNQQGDY LKQESCKNFE AAFNLFYQIF  240
PFGRFAHYAA NTAILEAVPE DVETVHVVEF DIGEGVQLSQ LIEAVAKRNK TLEVTAIKWD  300
AEESDVVAPP QWRFEETKRQ LQHHARSFGV NLKVEEIEIE DLVSEIKKAN KRGGRREFLA  360
FNSMVGLPHM RRRRRRGLLM EFLRLAKDLL ANSARGIITF GDGDACVKRG NDSSFNSSFD  420
ANVVHYKALL ESIESSFPIH LGEARIVMEL MFVAPYVSSH AWFEKWNEAR EGGNLQPWFG  480
LEGRRVSREM LIEAKEIVGA DSSYGVRGGE NGNDMTLEWN STPLVRVETW TNRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-1419853037374GRAS family transcription factor containing p
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1370375RRRRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009337755.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLM5WLS00.0M5WLS0_PRUPE; Uncharacterized protein
STRINGPOPTR_0016s13050.11e-177(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.12e-15GRAS family protein